PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

Current status of the database

 Uploaded and accessible in PPDB Arabidopsis thaliana
Number of annotated gene models from TAIR v10. Predictions and calculations of different physical-chemical properties are available for all gene models. 35386 (27416*)
Chloroplast predicted protein models by TargetP v 1.01 5343 (4155*)
Chloroplast predicted protein models by Predotar v 1.03 1591 (1483*)
Experimentally identified, published proteins (van Wijk lab) 7960
Manually verified proteins for gene name, subcellular location and function – most are plastid/chloroplast proteins identified experimentally in the public domain 16396  (from annotation upload file)

* genes

 Uploaded and accessible in PPDB Zea mays
Chloroplast predicted protein models by TargetP v 1.01 9319 (6578*)
Number of annotated proteins in maize genome annotation 4a53  54040 (32824*)
Experimentally identified chloroplast proteins (van Wijk lab)matching to maize genome annotation 4a53 10417


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help