PPDB

The Plant Proteome Database

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PPDB home page

Current status of the database

 Uploaded and accessible in PPDB Arabidopsis thaliana
Number of annotated gene models from TAIR v8. Predictions and calculations of different physical-chemical properties are available for all gene models. 32825 (27235)*
Chloroplast predicted protein models by TargetP v 1.01 4919 (4069)*
Chloroplast predicted protein models by Predotar v 1.03 1591 (1483)*
Experimentally identified, published proteins (van Wijk lab) 6354
Manually verified proteins for gene name, subcellular location and function – most are plastid/chloroplast proteins identified experimentally in the public domain 7260  (from annotation upload file)

* genes

 Uploaded and accessible in PPDB Zea mays
Number of ZmGI from TIGR  56364
Number of AZM from TIGR  243807
Number of annotated proteins in maize genome release v2b5  57303
Experimentally identified chloroplast proteins  (van Wijk lab)  matching to ZmGI  1398
Experimentally identified chloroplast proteins (van Wijk lab)matching to AZM 259
Experimentally identified chloroplast proteins (van Wijk lab)matching to maize genome v2b5 3930


©Klaas J. van Wijk Lab, Cornell University