PPDB

The Plant Proteome Database

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PPDB home page

Current status of the database

 Uploaded and accessible in PPDB Arabidopsis thaliana
Number of annotated gene models from Araport v11. Predictions and calculations of different physical-chemical properties are available for all gene models. 48359 (27655*)
Chloroplast predicted protein models by TargetP v 1.01 5343 (4155*)
Chloroplast predicted protein models by Predotar v 1.03 1591 (1483*)
Experimentally identified, published proteins (van Wijk lab) 10589
Manually verified proteins for gene name, subcellular location and function – most are plastid/chloroplast proteins identified experimentally in the public domain 18356  (from annotation upload file)

* genes

 Uploaded and accessible in PPDB Zea mays
Number of annotated proteins in maize reference genome B73 AGPv5 72539 (39756*)
Number of annotated proteins in maize reference genome B73 AGPv3 63241 (39475*)
Chloroplast predicted protein models by TargetP v 1.01 9319 (6578*)
Number of annotated proteins in maize genome annotation 4a53  54040 (32824*)
Experimentally identified chloroplast proteins (van Wijk lab)matching to maize genome annotation 4a53 29199


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