PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

ATMG00090.1   structural constituent of ribosome%3Bprotein binding protein

Lab Annot. ribosomal protein S3
Mapman: 29.2.1.1.2.1.3 protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S3
Curated Location mitochondria

TAIR curated location: mitochondrial small ribosomal subunit
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
ATCG00800.1 11Arabidopsis thaliana5E-0611231501189 (1017)M
Osm1g00260.1 7Oryza sativa056576801 (1)C
Os12g34124.1 7Oryza sativa056576800 (0)C
Os12g34054.1 7Oryza sativa056576800 (0)C
YP_588265.1 agpv5Zea mays056681860 (0)_
YP_588320.1 agpv5Zea mays056681860 (0)_
GRMZM5G861791_P01 3.21Zea mays056681860 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: QueH(2) Ribosomal_S3_C(1)
TargetP: Mitochondria (Class 5 C0.048; M0.643; S0.011; _0.447)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 556 aa (-cTP 545)
Molecular Weight 64.72 kDA(-cTP )
PI 10.43(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19452453(14-3-3-interacting proteins)
19114538(guard cells Arabidopsis leaf)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help