PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

ATCG01070.1   NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
Lab Annot. NDH E (4L)
Mapman: 1.1.6 PS.lightreaction.NADH DH
Curated Location thylakoid-integral (Pubmed: 23198870 )

TAIR curated location: chloroplast8768377
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
ATMG00650.1 11Arabidopsis thaliana1E-078139600 (0)S
Osp1g00930.1 7Oryza sativa2E-4410176881 (1)S
Os06g46438.1 7Oryza sativa2E-4410176880 (0)S
Os10g21404.1 7Oryza sativa2E-4410176880 (0)S
GRMZM2G134325_P01 3.21Zea mays2E-4410176888 (8)S
v1_GRMZM2G134325_P01 4a53Zea mays2E-4410176880 (0)S
plastid_NP_043089.1 agpv5Zea mays4E-4310175870 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Oxidored_q2(1)
TargetP: Secreted (Class 2 C0.001; M0.140; S0.851; _0.106)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon:
TAT position:
Length 101 aa (-cTP 77)
Molecular Weight 11.29 kDA(-cTP )
PI 8.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
45Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  

* For details about the exprimental sources click here.

Published Proteomics Data

 14729914(thylakoid stripped)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help