PPDB

The Plant Proteome Database

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ATCG01000.1   Ycf1 protein

Lab Annot. YCF1.2 - Tic214 (part of 1 mDa TIC complex)
Mapman: 29.3.3 protein.targeting.chloroplast
Curated Location envelope-inner-integral (Pubmed: 23198870 23372012 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
ATCG01130.1 11Arabidopsis thaliana0343100100107 (104)S
AT2G07565.1 11Arabidopsis thaliana3E-13332764690 (0)S
ATMG00370.1 11Arabidopsis thaliana7E-12018892940 (0)S
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#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ycf1(1)
TargetP: Secreted (Class 1 C0.002; M0.179; S0.981; _0.045)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon:
TAT position:
Length 343 aa (-cTP 294)
Molecular Weight 39.86 kDA(-cTP )
PI 8.96(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data


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