PPDB

The Plant Proteome Database

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ATCG00905.1   ribosomal protein S12C

Lab Annot. 30S ribosomal protein S12C (identical to S12A,B)
Mapman: 29.2.1.1.1.1 protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit
Curated Location plastid ribosome (Pubmed: 23198870 )

TAIR curated location: plastid small ribosomal subunit
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
ATCG01230.1 11Arabidopsis thaliana5E-568510010013 (12)M
ATMG00980.1 11Arabidopsis thaliana4E-338563800 (0)_
AT2G07675.1 11Arabidopsis thaliana4E-338563800 (0)_
Osp1g01040.1 7Oryza sativa4E-5285929523 (23)M
Os10g21374.1 6Oryza sativa4E-528592950 (0)M
Os04g16888.1 6Oryza sativa4E-528592950 (0)M
plastid_NP_043003.1 agpv5Zea mays3E-528592950 (0)C
v1_NP_043003 4a53Zea mays3E-528592957 (7) 
v1_GRMZM2G474534_P02 4a53Zea mays3E-528592953 (3)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosom_S12_S23(1)
TargetP: Mitochondria (Class 4 C0.082; M0.545; S0.050; _0.213)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 85 aa (-cTP 67)
Molecular Weight 9.37 kDA(-cTP )
PI 11.07(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

20423899(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help