PPDB

 The Plant Proteome Database

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ATCG00440.1   NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 3 protein
Lab Annot. NDH C (NDH-3)
Mapman: 1.1.6 PS.lightreaction.NADH DH
Curated Location thylakoid-integral (Pubmed: 23198870 )

TAIR curated location: chloroplast8768377
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G07751.1 11Arabidopsis thaliana3E-178139660 (0)S
ATMG00990.1 11Arabidopsis thaliana3E-178139660 (0)S
Osp1g00390.1 7Oryza sativa2E-7012085950 (0)S
Os10g38206.1 7Oryza sativa2E-7012085950 (0)S
Osm1g00280.1 7Oryza sativa3E-1611934576 (6)_
NP_043030.1 agpv5Zea mays2E-6912085940 (0)S
v1_NP_043030 4a53Zea mays2E-69120859433 (33) 
YP_588354.1 agpv5Zea mays9E-238344720 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Oxidored_q4(1) TMEM33_Pom33(1)
TargetP: Secreted (Class 1 C0.004; M0.017; S0.982; _0.089)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon:
TAT position:
Length 120 aa (-cTP 97)
Molecular Weight 13.84 kDA(-cTP )
PI 4.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1935Detail       leaf [A. thaliana] chloroplast wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help