PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

ATCG00420.1 NADH dehydrogenase subunit J

Lab Annot.

NDH J
Mapman: 1.1.6 PS.lightreaction.NADH DH

Curated Location

thylakoid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

TAIR curated location: chloroplast

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Osp1g00370.1 7 Oryza sativa 3E-96 157 81 91 43 (43) _
Os10g38212.1 7 Oryza sativa 3E-96 157 81 91 18 (18) _
Os01g58024.1 7 Oryza sativa 3E-96 157 81 91 18 (18) _
plastid_NP_043028.1 agpv5 Zea mays 2E-95 157 81 89 4 (4) _
GRMZM2G404025_P01 3.21 Zea mays 2E-95 157 81 89 270 (237) _
v1_NP_043028 4a53 Zea mays 2E-95 157 81 89 202 (202)
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Complex1_30kDa(1)
TargetP:	Cytoplasm (Class 5 C0.007; M0.568; S0.066; _0.685)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	158 aa (-cTP 142)
Molecular Weight	18.56 kDA(-cTP )
PI	6.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
310	Detail								leaf [A. thaliana]	total leaf tissue	clpr2-1:R2-TAPlong
311	Detail								leaf [A. thaliana]	total leaf tissue	clpr2-1:R2-his6
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
352	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
355	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
356	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
420	Detail								leaf [A. thaliana]	chloroplast stroma	clpR1-stop (EMS)
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
541	Detail								leaf [A. thaliana]	stroma (FPLC) >1 MDa stroma	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
875	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1208	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1331	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1332	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	shoot1
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1410	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1413	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR1	wild-type
1414	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR2	wild-type
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1445	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 1)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1447	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 3)
1448	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 1)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1457	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1463	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 3)
1465	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 1)
1469	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 3)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1507	Detail								[A. thaliana]		wild-type
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1596	Detail								[A. thaliana]
1611	Detail								leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1612	Detail								Natural Senescence leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1613	Detail								Natural Senescence leaf [A. thaliana]
1614	Detail								Natural Senescence leaf [A. thaliana]
1615	Detail								Natural Senescence leaf [A. thaliana]
1617	Detail								[A. thaliana]		m48
1618	Detail								[A. thaliana]		m48
1619	Detail								[A. thaliana]		m48
1620	Detail								[A. thaliana]		m48
1621	Detail								[A. thaliana]		m48
1622	Detail								[A. thaliana]		m48
1625	Detail								Rosettes [A. thaliana]		Wild-type
1626	Detail								Rosettes [A. thaliana]		k1xk3
1627	Detail								Rosettes [A. thaliana]	total leaf tissue thylakoid + envelope	Wild-type
1628	Detail								Rosettes [A. thaliana]	total leaf tissue thylakoid + envelope	k1xk3
1629	Detail								Rosettes [A. thaliana]		Wild-type
1630	Detail								Rosettes [A. thaliana]	total leaf tissue thylakoid + envelope	k1xk3
1639	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1643	Detail								leaf [A. thaliana]	total leaf tissue	Wild-type
1651	Detail								leaf [A. thaliana]	plastoglobules plastoglobule	wild-type
1675	Detail								Rosettes [A. thaliana]
1676	Detail								Rosettes [A. thaliana]
1678	Detail								Rosettes [A. thaliana]
1679	Detail								Rosettes [A. thaliana]
1695	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1698	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1699	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1709	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1710	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1711	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1712	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1713	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1714	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1715	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1716	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1744	Detail								[A. thaliana]		Mep-6
1745	Detail								[A. thaliana]		Col-0
1765	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
1829	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1 Fluctuating light
1830	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1831	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1 Normal light
1832	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1833	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1928	Detail								Rosettes [A. thaliana]	Thylakoids	wild-type
1929	Detail								Rosettes [A. thaliana]	Thylakoids	wild-type
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
1934	Detail								leaf [A. thaliana]	chloroplast	wild-type
1935	Detail								leaf [A. thaliana]	chloroplast	wild-type
1936	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1937	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1938	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1983	Detail								leaf [A. thaliana]	plastid	wild-type
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1985	Detail								leaf [A. thaliana]	plastid	wild-type
1986	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1987	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1999	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2132	Detail								leaf [A. thaliana]	chloroplast fractionation	MSH1
2133	Detail								leaf [A. thaliana]	chloroplast fractionation	MSH1
2144	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2216	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 st
2218	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2224	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 strep
2225	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 trap
2263	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 trap
2266	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 wild-type
2267	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 TRAP
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2314	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2315	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18538804(total leaf)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21311031(chloroplasts)
21311031(mitochondria)

Comparative Proteomics Data