PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

ATCG00360.1   photosystem I assembly protein
Lab Annot. YCF3 PSI assembly TPR
Mapman: 29.8 protein.protein assembly and cofactor ligation; 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location thylakoid-peripheral-stromal-side (Pubmed: 23198870 20807881 )

TAIR curated location: chloroplast10574454
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os10g21254.1 7Oryza sativa3E-8212692943 (3)_
Os04g16736.1 7Oryza sativa3E-8212692943 (3)_
Os10g38216.1 7Oryza sativa3E-8212692943 (3)_
plastid_NP_043026.1 agpv5Zea mays4E-8512693950 (0)_
v1_NP_043026 4a53Zea mays4E-85126939525 (25) 
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF2225(2) EST1_DNA_bind(2) Fis1_TPR_C(2) MIT(3) Sel1(3) SPO22(1) TPR_1(5) TPR_1
TargetP: Cytoplasm (Class 2 C0.089; M0.115; S0.174; _0.844)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 126 aa (-cTP 124)
Molecular Weight 14.75 kDA(-cTP )
PI 4.89(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help