PPDB

PPDB	The Plant Proteome Database

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AT5G67240.1 small RNA degrading nuclease 3

Lab Annot.

small RNA degrading nuclease 3
Mapman: 28.99 DNA.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G67240.4 11 Arabidopsis thaliana 0 637 100 100 0 (0) _
AT5G67240.3 11 Arabidopsis thaliana 0 609 90 91 0 (0) _
AT5G67240.2 11 Arabidopsis thaliana 0 497 98 98 0 (0) _
Os04g55700.1 7 Oryza sativa 6E-114 461 43 61 0 (0) _
Os12g08740.2 7 Oryza sativa 6E-21 144 38 58 0 (0) S
Os12g08740.1 7 Oryza sativa 3E-20 144 38 58 0 (0) C
Zm00001eb068290_P002 agpv5 Zea mays 7E-111 441 42 61 0 (0) _
GRMZM2G082097_P01 3.21 Zea mays 2E-110 432 43 62 0 (0) _
Zm00001eb068290_P001 agpv5 Zea mays 2E-109 441 42 60 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3213(4) DUF4094(3) FAM176(3) HMG_CoA_synt_C(3) Med9(1) PknH_C(3) RRM_1(3) SET
TargetP:	Cytoplasm (Class 2 C0.031; M0.039; S0.122; _0.911)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	782 aa (-cTP 703)
Molecular Weight	87.46 kDA(-cTP )
PI	6.72(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

17272265(ubiquinated proteins (suspension cells))
19253305(phosphoproteins (etiolated seedling))
20813957(SUMO proteome)

Comparative Proteomics Data