PPDB

The Plant Proteome Database

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AT5G66920.1   SKU5 similar 17

Lab Annot.
Mapman: 26.7 misc.oxidases - copper, flavone etc.
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G37160.1 11Arabidopsis thaliana053760733 (3)S
AT2G23630.2 11Arabidopsis thaliana052062750 (0)S
AT2G23630.1 11Arabidopsis thaliana052062754 (4)S
Os07g02810.1 7Oryza sativa052161775 (5)S
Os07g32660.1 7Oryza sativa053357729 (9)S
Os06g46500.1 7Oryza sativa0518557210 (10)S
GRMZM2G076225_P03 3.21Zea mays052157725 (5)S
Zm00001eb322470_P001 agpv5Zea mays052157720 (0)S
v1_GRMZM2G076225_P03 4a53Zea mays052157723 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cu-oxidase(2) Cu-oxidase_2(3) Cu-oxidase_3(1)
TargetP: Secreted (Class 2 C0.001; M0.162; S0.936; _0.069)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 546 aa (-cTP 543)
Molecular Weight 60.82 kDA(-cTP )
PI 9.48(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
2245Detail       seedlings [A. thaliana] total tissue wild-type
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
17526915(glycoproteome cell wall (stems))
WallDB-E.Jamet(cell wall reference proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help