PPDB

The Plant Proteome Database

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AT5G66540.1   U3 small nucleolar ribonucleoprotein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G66540.2 11Arabidopsis thaliana05241001000 (0)_
Os12g04010.1 7Oryza sativa2E-10226764770 (0)_
Os11g04200.1 7Oryza sativa1E-10126764760 (0)_
GRMZM2G005308_P01 3.21Zea mays5E-12151048662 (2)_
GRMZM2G005308_P02 3.21Zea mays5E-12151048662 (2)_
Zm00001eb293550_P001 agpv5Zea mays5E-12151048660 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Mpp10(2) PI3K_1B_p101(1)
TargetP: Cytoplasm (Class 2 C0.128; M0.074; S0.095; _0.821)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 524 aa (-cTP 438)
Molecular Weight 59.74 kDA(-cTP )
PI 4.50(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help