PPDB

 The Plant Proteome Database

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AT5G66520.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G06540.1 11Arabidopsis thaliana062442640 (0)S
AT5G48910.1 11Arabidopsis thaliana061843624 (4)C
AT5G40405.2 11Arabidopsis thaliana5E-17259640620 (0)_
Os07g02280.1 7Oryza sativa3E-16260341580 (0)C
Os08g15090.1 7Oryza sativa3E-15953845630 (0)C
Os01g08120.1 7Oryza sativa2E-15859140610 (0)M
GRMZM2G114572_P01 3.21Zea mays5E-17654546640 (0)M
v1_GRMZM2G114572_P01 4a53Zea mays5E-17654546640 (0)M
GRMZM2G481373_P01 3.21Zea mays7E-17166640580 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DYW_deaminase(1) PPR(10) PPR_1(9) PPR_2(8) PPR_3(10) PPR_long(3) RPN7(2) Vps39_1
TargetP: Cytoplasm (Class 5 C0.125; M0.124; S0.342; _0.464)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 620 aa (-cTP 597)
Molecular Weight 70.72 kDA(-cTP )
PI 7.53(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help