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AT5G66120.1
3-dehydroquinate synthase
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| Lab Annot. |
3-dehydroquinate synthase - only model .2 has N-terminal cTP
Mapman: 18.5 Co-factor and vitamine metabolism.folate & vitamine K |
| Curated Location |
plastid stroma (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
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| Species |
Arabidopsis thaliana
Source:
TAIR Arabidopsis (v.11) |
| Links |
TAIR PeptideAtlas POGS SUBA Uniprot PTM
Get sequence
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Related Genes
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#Spots: The number of publicly accessible spots are in parenthesis
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| Prediction |
| PFAM: |
DHQ_synthase(1) Fe-ADH(2) Fe-ADH_2(1) Rep_fac_C(1) |
| TargetP: |
Mitochondria (Class 5 C0.008; M0.647; S0.109; _0.551) |
| Predotar: |
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| Subcel. Location: |
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| TM-HMM prediction: |
No |
| Aramemnon: |
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| TAT position: |
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| Length |
338 aa (-cTP 325) |
| Molecular Weight |
37.08 kDA(-cTP ) |
| PI |
6.61(-cTP ) |
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Experimental Evidence
Expand
View Identified Peptides
View GeneModel
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| Expr* | Spot | MW native | MW denatured | pI native | pI denatured | Type | Mowse | Ambiguity | Tissue | Sample from | Genotype |
| 303 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 326 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 339 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 351 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 | wild-type |
| 352 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 | wild-type |
| 371 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
| 451 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
| 528 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type (wt2) |
| 621 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
| 667 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast plastoglobule | wild-type (rep. 2-1) |
| 871 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 873 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 874 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 1292 | Detail | | | | | | | | leaf [A. thaliana] | co-IP cGEP (rep. 1) stroma | wild-type |
| 1294 | Detail | | | | | | | | leaf [A. thaliana] | co-IP cGEP (rep. 2) stroma | wild-type |
| 1401 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.14 -rep. 1 | clpp3-1 |
| 1403 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.14 -rep. 1 | clpp3-1 |
| 1405 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | wild-type |
| 1406 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | wild-type |
| 1407 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | clpr2-1 |
| 1408 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | clpr2-1 |
| 1409 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.1 | wild-type |
| 1410 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.2 | wild-type |
| 1412 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.2 | clpr2-1 |
| 1418 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 3) |
| 1441 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (0 day HL) | wild-type (rep. 3) |
| 1529 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue - 0 uM CAP | wild-type (rep. 1) |
| 1634 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | wild-type |
| 1635 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | clpt1-2 |
| 1938 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast | Prep1_Prep2 |
| 1948 | Detail | | | | | | | | leaf [A. thaliana] | stroma ClpS stroma | clpS |
| 1949 | Detail | | | | | | | | leaf [A. thaliana] | stroma ClpS stroma | clpS |
| 2113 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | wt |
| 2114 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | wt |
| 2115 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | cGep |
| 2116 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | cGep |
| 2224 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | Clp P3 strep |
* For details about the exprimental sources
click here.
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Published Proteomics Data
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15815986(seedling)
18463617(suspension cells-phosphorylated proteins)
18431481(chloroplast)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19888209(leaves)
19423572(leaf (wt and clpr2-1))
19423572(stroma chloroplast (wt and clpr2-1))
21173025(root proteome)
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Comparative Proteomics Data
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| Expr* | Source | Tech. | Spot | PepSeq | ChargeState(z) | AreaRatio | Ambiguity | Tissue | Sample from |
| 180_181 | clpr2-1 cICAT - exp1 / wt cICAT - exp1 | cICAT | 5 | NLIGAFYQPQCVLVDTDTLNTLPDR + ICAT_l / NLIGAFYQPQCVLVDTDTLNTLPDR + ICAT_h | 3 | 0.98 | | leaf [A. thaliana] | chloroplast stroma |
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