PPDB

 The Plant Proteome Database

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AT5G65950.1   trafficking protein particle complex subunit-like protein
Lab Annot. unknown protein DUF1683 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g48380.1 7Oryza sativa01197537016 (16)_
Os02g48380.2 7Oryza sativa0710546916 (16)_
Zm00001eb252650_P002 agpv5Zea mays0118853700 (0)_
Zm00001eb252650_P001 agpv5Zea mays0118853700 (0)_
GRMZM2G480620_P01 3.21Zea mays0118853701 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BatD(1) Foie-gras_1(1) Gryzun(1) Gryzun-like(1) TRAPPC10(2)
TargetP: Cytoplasm (Class 2 C0.052; M0.096; S0.027; _0.857)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1190 aa (-cTP 1118)
Molecular Weight 132.23 kDA(-cTP )
PI 5.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1983Detail       leaf [A. thaliana] plastid wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
21826108(SYP trans-Golgi-filtered)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help