PPDB

The Plant Proteome Database

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AT5G65770.1   little nuclei4

Lab Annot. LINC4 (LITTLE NUCLEI4)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G65770.3 11Arabidopsis thaliana010101001001 (1)C
AT5G65780.2 11Arabidopsis thaliana0101898981 (1)C
AT5G65770.2 11Arabidopsis thaliana0101797971 (1)C
Os01g56140.1 7Oryza sativa9E-17581242656 (6)_
Os02g48010.1 7Oryza sativa1E-53775265223 (23)M
Zm00001eb152080_P001 agpv5Zea mays3E-15389138620 (0)_
GRMZM2G320013_P01 3.21Zea mays4E-15389138620 (0)_
Zm00001eb152080_P002 agpv5Zea mays4E-15389138620 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF948(4)
TargetP: Chloroplast (Class 4 C0.572; M0.262; S0.031; _0.212)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1010 aa (-cTP 996)
Molecular Weight 117.09 kDA(-cTP 115.52)
PI 5.13(-cTP 5.12)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2275Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help