PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G65720.1   nitrogen fixation S (NIFS)-like 1
Lab Annot. NFS1 or AtMtNIFS
Mapman: 14 S-assimilation
Curated Location mitochondria

TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G65720.3 11Arabidopsis thaliana04531001000 (0)M
AT5G65720.2 11Arabidopsis thaliana032510010035 (8)_
AT1G08490.1 11Arabidopsis thaliana2E-263922843167 (121)C
Os09g16910.2 7Oryza sativa041175882 (2)M
Os09g16910.3 7Oryza sativa041175882 (2)M
Os09g16910.1 7Oryza sativa041175882 (2)M
GRMZM2G322314_P01 3.21Zea mays043174864 (2)M
Zm00001eb310290_P001 agpv5Zea mays043174860 (0)M
v1_GRMZM2G322314_P01 4a53Zea mays043174867 (7)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Aminotran_5(1) Beta_elim_lyase(1) DegT_DnrJ_EryC1(1) Pyridoxal_deC(2)
TargetP: Mitochondria (Class 2 C0.104; M0.793; S0.024; _0.117)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 453 aa (-cTP 422)
Molecular Weight 50.30 kDA(-cTP )
PI 6.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1517Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2269Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
17137349(ATP-binding-mitochondria cell suspension)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
20018591(Zn2+ binding (mitochondria - cell culture))
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help