PPDB

 The Plant Proteome Database

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AT5G65270.1   RAB GTPase homolog A4A
Lab Annot. Rab GTPase homolog A4a (AtRABA4a)
Mapman: 30.5 signalling.G-proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G39990.1 11Arabidopsis thaliana3E-129214809223 (23)_
AT3G12160.1 11Arabidopsis thaliana4E-11421871848 (8)S
AT5G47960.1 11Arabidopsis thaliana2E-109217708416 (16)S
Os10g23100.1 7Oryza sativa1E-121215788926 (26)S
Os09g10940.1 7Oryza sativa9E-11722873849 (9)_
Os01g62950.1 7Oryza sativa8E-9321262767 (7)_
Zm00001eb223850_P001 agpv5Zea mays2E-12222477870 (0)S
v1_GRMZM2G122805_P01 4a53Zea mays2E-12222477875 (5)S
GRMZM2G122805_P01 3.21Zea mays2E-12222477874 (4)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Arf(1) GTP_EFTU(1) Gtr1_RagA(1) MMR_HSR1(1) Ras(1) Roc(1) RsgA_GTPase(2) TniB(1)
TargetP: Cytoplasm (Class 3 C0.024; M0.341; S0.185; _0.891)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 226 aa (-cTP 192)
Molecular Weight 24.84 kDA(-cTP )
PI 5.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1568Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1676Detail       Rosettes [A. thaliana]  
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2245Detail       seedlings [A. thaliana] total tissue wild-type
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 15276459(epidermis)
16618929(PlasmaMembrane-LOPIT-callus)
17317660(Plasma Membrane proteome)
17432890(leaf total membranes)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21826108(SYP trans-Golgi-filtered)
21173025(root proteome)

Comparative Proteomics Data

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