PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G65200.1 plant U-box 38

Lab Annot.

plant U-box 38
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G62560.1 11 Arabidopsis thaliana 3E-175 565 50 66 0 (0) M
AT3G47820.1 11 Arabidopsis thaliana 8E-163 545 51 68 0 (0) M
AT5G40140.1 11 Arabidopsis thaliana 3E-146 526 46 65 0 (0) C
Os06g13080.1 7 Oryza sativa 5E-55 291 40 61 0 (0) C
Os09g21740.1 7 Oryza sativa 2E-46 327 39 58 0 (0) M
Os06g13090.1 7 Oryza sativa 7E-46 269 39 60 0 (0) _
v1_GRMZM2G425965_P01 4a53 Zea mays 6E-53 308 40 60 0 (0) M
Zm00001eb099030_P001 agpv5 Zea mays 6E-53 308 40 60 0 (0) M
GRMZM2G425965_P01 3.21 Zea mays 6E-53 308 40 60 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Arm(5) HEAT_2(3) KAP(1) RTP1_C1(3) U-box(1) zf-RING_UBOX(1)
TargetP:	Mitochondria (Class 5 C0.748; M0.748; S0.002; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	556 aa (-cTP 505)
Molecular Weight	61.78 kDA(-cTP )
PI	6.24(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data