PPDB

PPDB	The Plant Proteome Database

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AT5G63880.1 SNF7 family protein

Lab Annot.

VPS20.1
Mapman: 27.3.71 RNA.regulation of transcription.SNF7

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G63880.2 11 Arabidopsis thaliana 2E-148 243 90 90 3 (2) _
AT5G09260.1 11 Arabidopsis thaliana 6E-127 221 85 92 0 (0) _
AT2G19830.2 11 Arabidopsis thaliana 1E-07 147 28 48 0 (0) _
Os02g38300.1 7 Oryza sativa 9E-101 235 64 80 10 (10) _
Os02g38300.2 7 Oryza sativa 6E-95 210 65 83 10 (10) _
Os11g03060.1 7 Oryza sativa 6E-06 93 27 55 0 (0) _
Zm00001eb246180_P001 agpv5 Zea mays 2E-100 236 63 79 0 (0) _
v1_GRMZM2G101274_P01 4a53 Zea mays 9E-100 236 63 79 4 (4) M
GRMZM2G101274_P01 3.21 Zea mays 9E-100 236 63 79 6 (6) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1269(3) FUSC(1) Snf7(1) TACC_C(2) TINF2_N(1) TMPIT(1)
TargetP:	Cytoplasm (Class 3 C0.050; M0.269; S0.070; _0.782)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	219 aa (-cTP 201)
Molecular Weight	24.79 kDA(-cTP )
PI	4.72(-cTP )

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data