PPDB

The Plant Proteome Database

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AT5G63830.1   HIT-type Zinc finger family protein

Lab Annot. zinc finger (HIT type) protein
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os10g37640.1 7Oryza sativa3E-14240052710 (0)C
Os10g37640.2 7Oryza sativa1E-10935748680 (0)_
Zm00001eb044440_P002 agpv5Zea mays3E-14040051690 (0)C
GRMZM2G135688_P01 3.21Zea mays1E-13940051690 (0)_
v1_GRMZM2G135688_P03 4a53Zea mays1E-13940051690 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF3837(1) SHQ1(1) zf-HIT(2) zf-MYND(1)
TargetP: Chloroplast (Class 2 C0.948; M0.022; S0.036; _0.235)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 406 aa (-cTP 345)
Molecular Weight 45.51 kDA(-cTP 38.57)
PI 4.93(-cTP 4.71)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help