PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G63810.1   beta-galactosidase 10
Lab Annot. beta-galactosidase 10 (BGAL10)
Mapman: 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G28470.3 11Arabidopsis thaliana071854700 (0)S
AT2G28470.1 11Arabidopsis thaliana07185470111 (62)S
AT2G28470.4 11Arabidopsis thaliana071854700 (0)S
Os01g65460.1 7Oryza sativa071362770 (0)M
Os01g65460.2 7Oryza sativa071362770 (0)M
Os03g15020.1 7Oryza sativa072751684 (4)_
Zm00001eb146080_P001 agpv5Zea mays071463790 (0)S
GRMZM2G038281_P01 3.21Zea mays071463790 (0)S
GRMZM2G038281_P02 3.21Zea mays071463790 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BetaGal_dom4_5(2) GHD(1) Glyco_hydro_35(1) Glyco_hydro_42(2)
TargetP: Secreted (Class 1 C0.025; M0.036; S0.887; _0.043)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 741 aa (-cTP 713)
Molecular Weight 83.10 kDA(-cTP )
PI 8.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 14595688(Cell Wall proteome)
15815986(Leaf)
17526915(glycoproteome cell wall (stems))
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help