PPDB

PPDB	The Plant Proteome Database

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AT5G63800.1 Glycosyl hydrolase family 35 protein

Lab Annot.

beta-galactosidase 6 (BGAL6) (MUM2) (abundant)
Mapman: 26.3 misc.gluco-, galacto- and mannosidases

Curated Location

not plastid (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G77410.1 11 Arabidopsis thaliana 0 705 58 73 0 (0) S
AT1G77410.3 11 Arabidopsis thaliana 0 710 58 72 0 (0) S
AT2G16730.1 11 Arabidopsis thaliana 0 673 50 68 0 (0) S
Os05g35360.1 7 Oryza sativa 0 709 53 65 0 (0) S
Os08g43570.1 7 Oryza sativa 0 684 48 67 0 (0) S
Os03g06940.1 7 Oryza sativa 0 717 49 64 0 (0) S
Zm00001eb348860_P001 agpv5 Zea mays 0 690 56 69 0 (0) S
Zm00001eb348860_P002 agpv5 Zea mays 0 690 56 69 0 (0) S
AC234152.1_FGP005 3.21 Zea mays 0 687 52 65 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BetaGal_dom4_5(2) GHD(1) Glyco_hydro_35(1) Glyco_hydro_42(1)
TargetP:	Secreted (Class 1 C0.008; M0.041; S0.971; _0.063)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	718 aa (-cTP 691)
Molecular Weight	79.76 kDA(-cTP )
PI	8.97(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1448	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 1)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1611	Detail								leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1612	Detail								Natural Senescence leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1614	Detail								Natural Senescence leaf [A. thaliana]
1617	Detail								[A. thaliana]		m48
1618	Detail								[A. thaliana]		m48
1619	Detail								[A. thaliana]		m48
1620	Detail								[A. thaliana]		m48
2007	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2030	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2399	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1WTSTREP
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

15593128(Cell Wall proteome)
18538804(apoplast)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data