PPDB

The Plant Proteome Database

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AT5G63470.1   nuclear factor Y%2C subunit C4

Lab Annot. CCAAT-box binding transcription factor Hap5a
Mapman: 27.3.16 RNA.regulation of transcription.CCAAT box binding factor family, HAP5
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G63470.2 11Arabidopsis thaliana025010010012 (12)_
AT3G48590.1 11Arabidopsis thaliana2E-121210909312 (12)_
AT1G54830.2 11Arabidopsis thaliana5E-66162647413 (13)_
Os03g14669.2 7Oryza sativa5E-6718865704 (4)_
Os03g14669.1 7Oryza sativa5E-6718865704 (4)_
Os02g07450.1 7Oryza sativa1E-6414671780 (0)_
Zm00001eb010770_P002 agpv5Zea mays1E-6818263680 (0)_
GRMZM2G089812_P02 3.21Zea mays1E-68182636830 (6)_
GRMZM2G089812_P01 3.21Zea mays1E-68182636830 (6)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBFD_NFYB_HMF(1) CENP-W(1) CENP-X(1) Histone(1)
TargetP: Cytoplasm (Class 5 C0.596; M0.053; S0.051; _0.737)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 250 aa (-cTP 230)
Molecular Weight 27.03 kDA(-cTP )
PI 4.97(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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