PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G63110.1   histone deacetylase 6
Lab Annot. histone deacetylase
Mapman: 27.3.55 RNA.regulation of transcription.HDA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38130.1 11Arabidopsis thaliana047661757 (2)_
AT4G38130.2 11Arabidopsis thaliana041267814 (2)_
AT5G35600.1 11Arabidopsis thaliana041363760 (0)_
Os08g25570.1 7Oryza sativa044171833 (3)_
Os06g38470.1 7Oryza sativa046164762 (2)_
Os06g38470.3 7Oryza sativa043466790 (0)_
v1_GRMZM2G136067_P01 4a53Zea mays044073830 (0)_
GRMZM2G136067_P01 3.21Zea mays044073834 (2)_
Zm00001eb177560_P001 agpv5Zea mays044073830 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Hist_deacetyl(1)
TargetP: Cytoplasm (Class 2 C0.126; M0.150; S0.020; _0.902)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 471 aa (-cTP 449)
Molecular Weight 52.65 kDA(-cTP )
PI 5.05(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 12938931(Total chloroplast envelope)
19546170(mature pollen grains)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help