PPDB

The Plant Proteome Database

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AT5G63040.1   transmembrane protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G63040.2 11Arabidopsis thaliana034299993 (3)M
AT1G48460.1 11Arabidopsis thaliana7E-3526032491 (1)C
AT1G48460.2 11Arabidopsis thaliana3E-2318933510 (0)C
Os01g50830.1 7Oryza sativa6E-10328257710 (0)C
Os01g50830.2 7Oryza sativa3E-7022353680 (0)M
Zm00001eb155560_P002 agpv5Zea mays2E-10330055690 (0)C
GRMZM2G034975_P01 3.21Zea mays2E-10330055690 (0)C
v1_GRMZM2G034975_P01 4a53Zea mays2E-10330055690 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Rimk_N(1)
TargetP: Chloroplast (Class 1 C0.930; M0.090; S0.070; _0.011)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 366 aa (-cTP 336)
Molecular Weight 40.66 kDA(-cTP 37.42)
PI 9.64(-cTP 9.39)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help