PPDB

PPDB	The Plant Proteome Database

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AT5G62800.1 Protein with RING/U-box and TRAF-like domain

Lab Annot.

Protein with RING/U-box and TRAF-like domains
Mapman: 33.99 development.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G62800.2 11 Arabidopsis thaliana 0 348 90 90 0 (0) _
AT5G37890.1 11 Arabidopsis thaliana 7E-87 269 46 67 0 (0) _
AT5G37870.1 11 Arabidopsis thaliana 9E-83 275 48 66 0 (0) _
Os01g55640.1 7 Oryza sativa 1E-24 122 37 54 0 (0) _
Os01g03290.1 7 Oryza sativa 8E-24 278 25 46 0 (0) _
Os01g03420.1 7 Oryza sativa 9E-22 130 40 54 0 (0) _
Zm00001eb132940_P001 agpv5 Zea mays 1E-21 247 27 42 0 (0) _
GRMZM2G008123_P01 3.21 Zea mays 1E-21 247 27 42 0 (0) _
v1_GRMZM2G008123_P01 4a53 Zea mays 1E-21 247 27 42 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DM(1) DUF4428(1) Sina(1) TAXi_N(1) zf-C3HC4_2(1) zf-RING_UBOX(1) zf-TRAF_2(1)
TargetP:	Cytoplasm (Class 4 C0.497; M0.049; S0.044; _0.732)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	348 aa (-cTP 317)
Molecular Weight	39.58 kDA(-cTP )
PI	8.23(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data