PPDB

The Plant Proteome Database

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AT5G62600.1   ARM repeat superfamily protein

Lab Annot. transportin-SR-related
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G12930.1 11Arabidopsis thaliana2E-0810637530 (0)_
Os10g33770.1 7Oryza sativa0974546930 (30)_
Os11g34120.1 7Oryza sativa2E-1894023402 (2)_
Zm00001eb045810_P001 agpv5Zea mays095560760 (0)_
Zm00001eb221820_P001 agpv5Zea mays095159760 (0)_
GRMZM2G010362_P01 3.21Zea mays0952587330 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: IBN_N(2) Importin_rep_3(1) Xpo1(2)
TargetP: Cytoplasm (Class 1 C0.063; M0.114; S0.064; _0.933)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 958 aa (-cTP 897)
Molecular Weight 106.92 kDA(-cTP )
PI 5.61(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2286Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help