PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G62460.1   RING/FYVE/PHD zinc finger superfamily protein
Lab Annot. RING/FYVE/PHD zinc finger protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G62460.2 11Arabidopsis thaliana03071001000 (0)C
AT5G62460.3 11Arabidopsis thaliana03071001000 (0)_
AT3G47550.3 11Arabidopsis thaliana5E-12029472810 (0)_
Os02g36740.3 7Oryza sativa7E-9323663730 (0)_
Os02g36740.1 7Oryza sativa7E-9323663730 (0)_
Os02g36740.2 7Oryza sativa7E-9323663730 (0)_
GRMZM2G156734_P02 3.21Zea mays8E-9323664740 (0)_
Zm00001eb244960_P001 agpv5Zea mays8E-9323664740 (0)_
Zm00001eb244960_P004 agpv5Zea mays8E-9323664740 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CcmD(1) DUF3675(1) RINGv(1) TctB(1) zf-RING_2(1)
TargetP: Chloroplast (Class 5 C0.672; M0.090; S0.044; _0.540)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 307 aa (-cTP 278)
Molecular Weight 33.66 kDA(-cTP 30.51)
PI 4.67(-cTP 4.74)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help