PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G62270.1   ribosomal protein L20

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G62270.2 11Arabidopsis thaliana038399992 (2)M
AT2G02880.1 11Arabidopsis thaliana1E-2718237560 (0)M
Os01g58750.1 7Oryza sativa3E-13931565760 (0)M
Os03g26220.1 7Oryza sativa3E-2717435570 (0)M
Zm00001eb150640_P002 agpv5Zea mays1E-12835461730 (0)M
GRMZM2G702059_P01 3.21Zea mays1E-12835461730 (0)M
v1_GRMZM2G702059_P01 4a53Zea mays1E-12835461730 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Bot1p(2) Dehyd-heme_bind(2) MRP-L20(1) UPF0240(1)
TargetP: Mitochondria (Class 4 C0.294; M0.538; S0.079; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 383 aa (-cTP 339)
Molecular Weight 43.94 kDA(-cTP )
PI 6.45(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2255Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(cell cycle interactome (cell culture))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help