PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G62190.1 DEAD box RNA helicase (PRH75)

Lab Annot.

DEAD box RNA helicase (RH07) (RH75)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

nucleus (Pubmed: 9121476 )

TAIR curated location: nucleolus & nucleus15133128

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G26742.1 11 Arabidopsis thaliana 1E-101 566 38 54 723 (590) C
AT5G26742.2 11 Arabidopsis thaliana 1E-101 566 38 54 752 (620) C
AT3G22330.1 11 Arabidopsis thaliana 3E-99 379 45 65 13 (5) M
Os09g34910.1 7 Oryza sativa 0 537 66 83 2 (2) C
Os03g61220.2 7 Oryza sativa 1E-113 545 40 59 119 (119) C
Os03g61220.1 7 Oryza sativa 2E-113 545 40 59 119 (119) C
GRMZM2G164956_P01 3.21 Zea mays 0 537 66 83 12 (12) C
GRMZM2G149520_P02 3.21 Zea mays 0 537 66 83 13 (13) _
v1_GRMZM2G149520_P02 4a53 Zea mays 0 537 66 83 19 (19) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(1) GUCT(1) Helicase_C(1) NARP1(1) ResIII(1) XAP5(1)
TargetP:	Cytoplasm (Class 1 C0.075; M0.120; S0.074; _0.939)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	671 aa (-cTP 646)
Molecular Weight	72.89 kDA(-cTP )
PI	9.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1620	Detail								[A. thaliana]		m48

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19714877(interactomes 14-3-3 complexes (cell culture))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data