PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G62150.1   peptidoglycan-binding LysM domain-containing protein

Lab Annot.
Mapman: 10.6 cell wall.degradation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G25433.1 11Arabidopsis thaliana2E-3010450690 (0)S
AT3G52790.1 11Arabidopsis thaliana2E-2210541560 (0)S
Os03g02685.1 7Oryza sativa1E-285870870 (0)M
Os04g48380.1 7Oryza sativa7E-285280920 (0)M
Os10g38040.1 7Oryza sativa2E-278356800 (0)M
Zm00001eb021470_P001 agpv5Zea mays4E-319847720 (0)S
v1_GRMZM2G434514_P01 4a53Zea mays4E-319847720 (0)S
GRMZM2G434514_P01 3.21Zea mays4E-319847720 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LysM(1)
TargetP: Secreted (Class 2 C0.074; M0.152; S0.821; _0.029)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 102 aa (-cTP 72)
Molecular Weight 11.28 kDA(-cTP )
PI 5.84(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help