PPDB

 The Plant Proteome Database

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AT5G62140.1   ATP-dependent Clp protease ATP-binding subunit
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g45460.1 7Oryza sativa4E-64191547017 (17)C
Zm00001eb187200_P001 agpv5Zea mays2E-6021049652 (2)C
GRMZM2G030240_P01 3.21Zea mays2E-60210496561 (37)C
v1_GRMZM2G030240_P01 4a53Zea mays2E-60210496536 (36)C

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM:
TargetP: Chloroplast (Class 5 C0.456; M0.199; S0.015; _0.309)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 241 aa (-cTP 206)
Molecular Weight 26.44 kDA(-cTP 22.34)
PI 8.86(-cTP 5.35)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
484Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
655Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
668Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3-1)
669Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-1)
679Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3 (rep. 2-1)
686Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-2)
688Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-2)
773Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2 - 5 ug)
774Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2- 10 ug)
776Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3 - 10 ug)
872Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (1-8); k2k3 (9-10)
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1122Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1123Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1124Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1372Detail       Total leaf 5d ML stress [A. thaliana] chloroplast plastoglobulewild-type
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1517Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1542Detail       leaf [A. thaliana] wild-type
1709Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1712Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1715Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1716Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1929Detail       Rosettes [A. thaliana] Thylakoids wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2291Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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