PPDB

The Plant Proteome Database

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AT5G61680.1   Pectin lyase-like superfamily protein

Lab Annot. Pectin lyase-like
Mapman: 10.8.1 cell wall.pectin*esterases.PME
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G69940.1 11Arabidopsis thaliana036475850 (0)S
AT5G07410.1 11Arabidopsis thaliana036475850 (0)S
AT5G07430.1 11Arabidopsis thaliana2E-17936066780 (0)S
Os12g37660.1 7Oryza sativa9E-8332943600 (0)C
Os05g44600.1 7Oryza sativa2E-7933141590 (0)S
Os07g41650.1 7Oryza sativa6E-7833739580 (0)S
v1_GRMZM2G382557_P01 4a53Zea mays1E-8632144611 (1)S
GRMZM2G382557_P01 3.21Zea mays1E-8632144611 (1)S
Zm00001eb028580_P001 agpv5Zea mays1E-8632144610 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Pectinesterase(1)
TargetP: Secreted (Class 2 C0.025; M0.019; S0.741; _0.131)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 364 aa (-cTP 317)
Molecular Weight 40.06 kDA(-cTP )
PI 9.30(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help