PPDB

 The Plant Proteome Database

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AT5G61670.1   orange protein
Lab Annot. Zn-finger J domain 4x repeats (homolog OR (Orange) protein?) (dual nucleus & plastid)
Mapman: 26.29* misc.DnaJ domain with unknown function
Curated Location nucleus (Pubmed: 26634929 )
plastid (Pubmed: 26634929 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G61670.2 11Arabidopsis thaliana03071001003 (3)C
AT5G06130.2 11Arabidopsis thaliana3E-125256687812 (10)C
AT5G06130.1 11Arabidopsis thaliana4E-115233697915 (13)_
Os02g43500.1 7Oryza sativa4E-15924686920 (0)M
Os02g33149.1 7Oryza sativa9E-123301607110 (10)C
Zm00001eb249060_P001 agpv5Zea mays1E-16125684920 (0)M
v1_GRMZM2G039089_P03 4a53Zea mays3E-12430361735 (5)C
GRMZM2G039089_P03 3.21Zea mays3E-12430361738 (7)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DnaJ_CXXCXGXG(2) DUF5351(3)
TargetP: Chloroplast (Class 5 C0.541; M0.528; S0.018; _0.090)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 307 aa (-cTP 252)
Molecular Weight 33.79 kDA(-cTP 27.44)
PI 7.52(-cTP 6.34)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1043Detail       leaf [A. thaliana] plastid - coIP thylakoid membrane 
1629Detail       Rosettes [A. thaliana] Wild-type
1713Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help