PPDB

The Plant Proteome Database

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AT5G61500.1   autophagy 3 (APG3)

Lab Annot. ATG3 (E2) - (ATG8/12 conjugation pathway)
Mapman: 29.5.2 protein.degradation.autophagy
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G61500.2 11Arabidopsis thaliana9E-1792401001000 (0)_
Os01g10290.1 7Oryza sativa3E-17431873860 (0)_
Os01g10290.2 7Oryza sativa3E-17431873860 (0)_
Os10g41110.1 7Oryza sativa3E-7617064810 (0)_
Zm00001eb391210_P002 agpv5Zea mays3E-16731771840 (0)_
Zm00001eb391210_P001 agpv5Zea mays3E-16731771840 (0)_
GRMZM5G818887_P01 3.21Zea mays3E-16731771840 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Autophagy_act_C(1)
TargetP: Cytoplasm (Class 3 C0.224; M0.167; S0.058; _0.654)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 313 aa (-cTP 230)
Molecular Weight 35.33 kDA(-cTP )
PI 4.63(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2237Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help