PPDB

PPDB	The Plant Proteome Database

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AT5G61140.1 U5 small nuclear ribonucleoprotein helicase

Lab Annot.

U5 small nuclear ribonucleoprotein helicase
Mapman: 27.1.2 RNA.processing.RNA helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G61140.2 11 Arabidopsis thaliana 0 2157 99 99 28 (19) M
AT1G20960.2 11 Arabidopsis thaliana 0 1717 47 64 119 (90) M
AT1G20960.1 11 Arabidopsis thaliana 0 1717 47 64 121 (92) M
Os03g11470.1 7 Oryza sativa 0 1127 74 86 0 (0) _
Os02g01740.1 7 Oryza sativa 0 1719 46 65 31 (31) M
Os03g53220.1 7 Oryza sativa 0 1901 42 60 0 (0) _
Zm00001eb400270_P001 agpv5 Zea mays 0 2095 72 84 0 (0) M
Zm00001eb328850_P001 agpv5 Zea mays 0 1717 46 65 0 (0) _
v1_GRMZM2G026991_P01 4a53 Zea mays 0 1717 46 65 49 (49) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(2) AAA_22(2) AAA_25(2) AAA_30(2) AAA_7(2) DEAD(2) Helicase_C(2) IstB_IS21
TargetP:	Mitochondria (Class 5 C0.504; M0.577; S0.024; _0.125)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	2146 aa (-cTP 2094)
Molecular Weight	243.17 kDA(-cTP )
PI	6.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1871	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2288	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data