PPDB

PPDB	The Plant Proteome Database

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AT5G61070.1 histone deacetylase of the RPD3/HDA1 superfamily 18

Lab Annot.

Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G61060.1 11 Arabidopsis thaliana 0 383 85 91 0 (0) _
AT5G61060.2 11 Arabidopsis thaliana 0 387 85 90 0 (0) _
AT3G18520.4 11 Arabidopsis thaliana 7E-74 342 42 58 0 (0) _
Os07g41090.3 7 Oryza sativa 4E-173 395 58 75 0 (0) _
Os07g41090.1 7 Oryza sativa 3E-170 395 58 75 0 (0) _
Os07g06980.1 7 Oryza sativa 1E-80 365 43 57 0 (0) C
Zm00001eb108570_P001 agpv5 Zea mays 2E-171 368 63 76 0 (0) _
GRMZM2G457889_P01 3.21 Zea mays 2E-171 368 63 76 2 (0) _
Zm00001eb108570_P002 agpv5 Zea mays 5E-169 372 63 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CCDC92(2) Hanta_nucleocap(1) Herpes_UL6(2) HHV-5_US34A(2) Hist_deacetyl(1) OmpH(
TargetP:	Cytoplasm (Class 4 C0.124; M0.156; S0.221; _0.477)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	682 aa (-cTP 655)
Molecular Weight	76.63 kDA(-cTP )
PI	5.58(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data