PPDB

PPDB	The Plant Proteome Database

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AT5G61060.1 histone deacetylase 5

Lab Annot.

histone deacetylase 5
Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

TAIR curated location: nucleus & cytoplasm15610358

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G61060.2 11 Arabidopsis thaliana 0 664 99 99 0 (0) _
AT5G61070.1 11 Arabidopsis thaliana 0 383 85 91 0 (0) _
AT5G61050.1 11 Arabidopsis thaliana 8E-130 239 76 86 0 (0) _
Os07g41090.1 7 Oryza sativa 0 684 54 70 0 (0) _
Os07g41090.3 7 Oryza sativa 0 491 56 72 0 (0) _
Os07g06980.1 7 Oryza sativa 9E-82 370 43 57 0 (0) C
Zm00001eb108570_P001 agpv5 Zea mays 0 669 55 69 0 (0) _
GRMZM2G457889_P01 3.21 Zea mays 0 669 55 69 0 (0) _
Zm00001eb108570_P002 agpv5 Zea mays 0 673 54 69 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Hist_deacetyl(1)
TargetP:	Cytoplasm (Class 2 C0.128; M0.073; S0.118; _0.921)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	660 aa (-cTP 657)
Molecular Weight	72.72 kDA(-cTP )
PI	5.39(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21173025(root proteome)

Comparative Proteomics Data