PPDB

 The Plant Proteome Database

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AT5G60940.1   Transducin/WD40 repeat-like superfamily protein
Lab Annot. transducin protein / WD-40 repeat protein
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G60940.2 11Arabidopsis thaliana03301001001 (1)C
AT3G49660.1 11Arabidopsis thaliana5E-2531823460 (0)C
AT4G02730.1 11Arabidopsis thaliana5E-2132024460 (0)_
Os03g54770.1 7Oryza sativa043661780 (0)S
Os03g54770.2 7Oryza sativa2E-9024558750 (0)S
Os03g54770.3 7Oryza sativa6E-9024458750 (0)S
GRMZM2G024051_P01 3.21Zea mays042961790 (0)M
Zm00001eb057630_P001 agpv5Zea mays042961790 (0)M
v1_GRMZM2G024051_P01 4a53Zea mays042961791 (1)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ANAPC4_WD40(5) Cytochrom_D1(3) Ge1_WD40(3) WD40(6)
TargetP: Cytoplasm (Class 3 C0.090; M0.281; S0.008; _0.707)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 429 aa (-cTP 393)
Molecular Weight 47.06 kDA(-cTP )
PI 8.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
2289Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help