PPDB

PPDB	The Plant Proteome Database

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AT5G60580.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G60580.3 11 Arabidopsis thaliana 0 487 100 100 0 (0) _
AT5G60580.2 11 Arabidopsis thaliana 0 494 98 98 0 (0) _
AT5G60580.4 11 Arabidopsis thaliana 0 494 98 98 0 (0) _
Os06g46366.1 7 Oryza sativa 2E-129 459 49 64 0 (0) _
Os02g06920.2 7 Oryza sativa 4E-124 457 47 63 0 (0) C
Os02g06920.1 7 Oryza sativa 4E-124 457 47 63 0 (0) C
Zm00001eb224730_P001 agpv5 Zea mays 1E-122 450 48 62 0 (0) _
GRMZM2G000753_P01 3.21 Zea mays 1E-122 450 48 62 0 (0) _
v1_GRMZM2G000753_P01 4a53 Zea mays 1E-122 450 48 62 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Fucose_iso_C(1) LapA_dom(2) RINGv(1) zf-RING-like(1) zf-RING_2(1)
TargetP:	Cytoplasm (Class 3 C0.276; M0.031; S0.002; _0.868)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	4 TMs
TAT position:
Length	487 aa (-cTP 433)
Molecular Weight	52.85 kDA(-cTP )
PI	8.87(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data