PPDB

PPDB	The Plant Proteome Database

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AT5G60540.1 pyridoxine biosynthesis 2

Lab Annot.

PDX2 (Vitamine b6 synthesis)
Mapman: 18.20* Co-factor and vitamine metabolism.vitamin b6

Curated Location

cytosol (Pubmed: 16157873 )

TAIR curated location: cytosol16157873

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os02g03740.1 7 Oryza sativa 7E-118 253 66 81 13 (13) S
Zm00001eb208970_P002 agpv5 Zea mays 6E-118 253 66 80 0 (0) _
GRMZM2G023528_P03 3.21 Zea mays 6E-118 253 66 80 71 (25) _
v1_GRMZM2G023528_P03 4a53 Zea mays 6E-118 253 66 80 26 (26) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BPL_N(2) DJ-1_PfpI(1) GATase(1) GATase_3(1) Peptidase_S51(1) SNO(1)
TargetP:	Mitochondria (Class 5 C0.050; M0.302; S0.127; _0.242)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	255 aa (-cTP 230)
Molecular Weight	27.44 kDA(-cTP )
PI	5.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2291	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data