PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G60370.1   exonuclease V-like protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G60370.2 11Arabidopsis thaliana031397980 (0)C
AT3G57110.1 11Arabidopsis thaliana2E-5912688930 (0)C
Os05g03200.1 7Oryza sativa6E-10128947680 (0)C
Zm00001eb265420_P001 agpv5Zea mays4E-10130149660 (0)C
GRMZM5G837841_P03 3.21Zea mays4E-10130149661 (1)C
v1_GRMZM2G051426_P01 4a53Zea mays4E-10130149661 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Exo5(3) PDDEXK_1(1)
TargetP: Chloroplast (Class 3 C0.874; M0.011; S0.020; _0.470)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 413 aa (-cTP 366) (-lTP 353)
Molecular Weight 46.97 kDA(-cTP 42.11)(-lTP 40.76)
PI 6.70(-cTP 8.41)(-lTP 9.002)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2226Detail       leaf [A. thaliana] total leaf tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help