PPDB

PPDB	The Plant Proteome Database

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AT5G60170.1 RNA binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA binding (RRM/RBD/RNP motifs) protein
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G60170.2 11 Arabidopsis thaliana 0 987 99 99 0 (0) _
AT3G45630.1 11 Arabidopsis thaliana 0 1012 65 76 0 (0) _
AT3G45630.2 11 Arabidopsis thaliana 0 1012 65 76 0 (0) _
Os12g01190.3 6 Oryza sativa 5E-133 335 62 74 0 (0) _
Os12g01190.2 7 Oryza sativa 2E-131 335 62 74 0 (0) _
Os12g01190.1 6 Oryza sativa 2E-131 335 62 74 0 (0) _
Zm00001eb094340_P005 agpv5 Zea mays 4E-149 1145 34 49 0 (0) _
Zm00001eb094340_P004 agpv5 Zea mays 4E-144 876 38 52 0 (0) _
v1_GRMZM2G400238_P01 4a53 Zea mays 1E-125 341 59 72 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Baculo_IE-1(1) DZR(1) FYVE(1) Prok-RING_4(2) RRM_1(1) Rtf2(1) zf-C3HC4_3(1) zf-R
TargetP:	Cytoplasm (Class 1 C0.073; M0.082; S0.095; _0.955)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	985 aa (-cTP 974)
Molecular Weight	108.01 kDA(-cTP )
PI	5.88(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data