PPDB

 The Plant Proteome Database

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AT5G59950.5   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot.
Mapman:
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G59950.1 11Arabidopsis thaliana2E-175245999917 (13)C
AT5G59950.3 11Arabidopsis thaliana5E-172245989815 (11)_
AT5G59950.4 11Arabidopsis thaliana1E-13518710010015 (11)C
Os03g17010.1 7Oryza sativa9E-62283526223 (23)_
Os03g17010.3 7Oryza sativa2E-5522254650 (0)_
Os03g17010.2 7Oryza sativa2E-5522254650 (0)_
Zm00001eb012600_P001 agpv5Zea mays4E-6926849610 (0)_
v1_GRMZM2G157329_P01 4a53Zea mays4E-69268496137 (37)_
v1_GRMZM2G157329_P02 4a53Zea mays4E-69268496137 (37)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FoP_duplication(2) RRM_1(1)
TargetP: Chloroplast (Class 5 C0.749; M0.046; S0.014; _0.674)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 245 aa (-cTP 196)
Molecular Weight 25.84 kDA(-cTP 20.79)
PI 9.83(-cTP 9.07)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2284Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help