PPDB

 The Plant Proteome Database

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AT5G59750.1   monofunctional riboflavin biosynthesis protein RIBA 3
Lab Annot. riboflavin biosynthesis protein, putativ, GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase))
Mapman: 18.3.1 Co-factor and vitamine metabolism.riboflavin.GTP cyclohydrolase II
Curated Location plastid stroma (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G59750.2 11Arabidopsis thaliana0543939330 (20)M
AT5G59750.3 11Arabidopsis thaliana044798990 (0)M
AT5G64300.1 11Arabidopsis thaliana04346583126 (58)C
Os05g38570.1 7Oryza sativa043575883 (3)M
Os08g37605.1 7Oryza sativa043366834 (4)C
Os08g37605.2 7Oryza sativa043366834 (4)C
v1_GRMZM2G105466_P01 4a53Zea mays0413668414 (14)C
GRMZM2G105466_P01 3.21Zea mays0413668415 (14)C
Zm00001eb244650_P001 agpv5Zea mays041366840 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DHBP_synthase(1) GTP_cyclohydro2(1)
TargetP: Mitochondria (Class 5 C0.214; M0.241; S0.188; _0.086)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 509 aa (-cTP 466)
Molecular Weight 56.15 kDA(-cTP )
PI 5.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1456Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1984Detail       leaf [A. thaliana] plastid wild-type
2112Detail       leaf [A. thaliana] Stroma stromawt
2113Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2117Detail       leaf [A. thaliana] Stroma stromacGep
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help