PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G59440.1   P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot. thymidylate kinase protein
Mapman: 23.4.4 nucleotide metabolism.phosphotransfer and pyrophosphatases.thymidylate kinase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G59440.3 11Arabidopsis thaliana02631001002 (2)C
AT5G59440.2 11Arabidopsis thaliana2E-1662241001003 (3)_
Os07g44630.1 7Oryza sativa9E-10622566792 (2)S
Os07g44630.2 7Oryza sativa9E-10622566792 (2)S
v1_GRMZM2G141551_P01 4a53Zea mays2E-10521768825 (5)M
GRMZM2G141551_P01 3.21Zea mays2E-10521768825 (5)M
Zm00001eb109870_P001 agpv5Zea mays2E-10521768820 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 6PF2K(1) AAA_17(2) KTI12(2) Thymidylate_kin(1)
TargetP: Mitochondria (Class 5 C0.417; M0.457; S0.027; _0.002)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 263 aa (-cTP 257)
Molecular Weight 29.55 kDA(-cTP )
PI 8.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help