PPDB

PPDB	The Plant Proteome Database

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AT5G58870.1 FTSH protease 9

Lab Annot.

FtsH9 (likely envelope)
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41

Curated Location

plastid (Pubmed: 23198870 )

TAIR curated location: chloroplast14630971

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G47060.1 11 Arabidopsis thaliana 0 813 82 89 0 (0) C
AT1G50250.1 11 Arabidopsis thaliana 3E-128 464 50 64 561 (473) C
AT5G42270.1 11 Arabidopsis thaliana 5E-124 456 50 64 1016 (832) C
Os02g43350.1 7 Oryza sativa 0 698 73 85 9 (9) C
Os06g51029.1 7 Oryza sativa 3E-126 464 49 64 128 (128) C
Os06g45820.1 7 Oryza sativa 4E-121 457 47 66 127 (127) C
GRMZM2G072865_P01 3.21 Zea mays 0 696 72 85 31 (31) C
v1_GRMZM2G163193_P03 4a53 Zea mays 0 509 70 84 8 (8) C
Zm00001eb186240_P002 agpv5 Zea mays 0 509 70 84 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_14(2) AAA_16(2) AAA_17(1) AAA_2(2) AAA_22(2) AAA_33(1) AAA_5(1) AAA_l
TargetP:	Chloroplast (Class 3 C0.480; M0.064; S0.026; _0.074)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:	2 TMs
TAT position:
Length	806 aa (-cTP 744)
Molecular Weight	87.84 kDA(-cTP 80.76)
PI	7.66(-cTP 6.62)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data