PPDB

 The Plant Proteome Database

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AT5G58500.1   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G07090.1 11Arabidopsis thaliana6E-8616175843 (0)_
AT2G42610.2 11Arabidopsis thaliana2E-69150688297 (33)_
AT2G42610.1 11Arabidopsis thaliana2E-69150688297 (33)_
Os01g61310.1 7Oryza sativa2E-7313382920 (0)C
Os05g39500.1 7Oryza sativa6E-7113381910 (0)_
Os05g28040.1 7Oryza sativa4E-7013281910 (0)_
GRMZM2G030116_P01 3.21Zea mays3E-8213384930 (0)_
Zm00001eb286430_P001 agpv5Zea mays3E-8213384930 (0)_
v1_GRMZM2G030116_P01 4a53Zea mays3E-8213384930 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF640(1)
TargetP: Chloroplast (Class 4 C0.669; M0.189; S0.017; _0.289)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 182 aa (-cTP 174)
Molecular Weight 19.69 kDA(-cTP 18.87)
PI 9.54(-cTP 9.66)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to siliques)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help