PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G58230.1   Transducin/WD40 repeat-like superfamily protein

Lab Annot. Transducin/WD40 repeat-like protein
Mapman: 33.99 development.unspecified
Curated Location
TAIR curated location: nucleus12736201
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G16780.1 11Arabidopsis thaliana2E-15642354691 (1)_
AT4G35050.1 11Arabidopsis thaliana3E-15240853690 (0)_
AT2G19520.1 11Arabidopsis thaliana2E-65445324965 (27)_
Os03g43890.1 7Oryza sativa040987942 (2)_
Os09g36900.1 7Oryza sativa2E-14340555684 (4)_
Os01g51300.2 7Oryza sativa1E-56455304616 (16)_
Zm00001eb050670_P002 agpv5Zea mays030385930 (0)_
GRMZM2G320606_P01 3.21Zea mays031482910 (0)_
Zm00001eb050680_P002 agpv5Zea mays041186930 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ANAPC4_WD40(5) CAF1C_H4-bd(4) eIF2A(2) WD40(5)
TargetP: Cytoplasm (Class 1 C0.105; M0.120; S0.053; _0.930)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 424 aa (-cTP 415)
Molecular Weight 48.19 kDA(-cTP )
PI 4.69(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19200160(flower-stage 12)
17216043(leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help