PPDB

The Plant Proteome Database

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AT5G58220.1   transthyretin-like protein

Lab Annot. TTL (TRANSTHYRETIN-LIKE PROTEIN); steroid binding
Mapman: 35.2 not assigned.unknown
Curated Location peroxisome (Pubmed: 17951448 21472859 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G58220.3 11Arabidopsis thaliana0324959519 (11)_
AT5G58220.2 11Arabidopsis thaliana032488883 (1)_
Os03g27320.1 7Oryza sativa6E-110297557138 (38)M
Os03g27320.2 7Oryza sativa1E-104293537038 (38)M
Os03g27320.3 7Oryza sativa2E-103288547138 (38)M
Zm00001eb392560_P002 agpv5Zea mays7E-11229656710 (0)C
Zm00001eb392560_P001 agpv5Zea mays5E-10428755690 (0)C
GRMZM6G548844_P01 3.21Zea mays4E-8422357710 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: OHCU_decarbox(2) Transthyretin(1)
TargetP: Cytoplasm (Class 2 C0.162; M0.101; S0.049; _0.850)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 324 aa (-cTP 235)
Molecular Weight 35.56 kDA(-cTP )
PI 6.15(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17951448(peroxisome (leaves))
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19888209(leaves)
19376835(leaf phosphoproteins)
19329564(peroxisomes (leaf))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21841088(mitochondria (2DE native gel))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help